DNA & Protein Sequence Tools
Translate
Translate a nucleotide sequence to a protein sequence.
ProtParam
Compute various physical and chemical parameters for a protein sequence.
PeptideCutter
Predicts potential protease cleavage sites for a protein sequence.
STRING
Database of known and predicted protein-protein interaction networks.
AlphaFold and Related Tools
AlphaFold Structure Database
Open access to over 200 million predicted protein structures.
ColabFold
Run AlphaFold2 (and other programs) via Google Colab notebooks.
Structure Prediction Software
Curated list of protein structure prediction software and tools.
AlphaFold Guide
Training course for researchers to understand fundamentals of Alphafold2, predictions, and assessment.
Data Repositories
EMPIAR
Repository for cryo-EM raw data.
SBGrid Data Bank
Deposit raw data for X-ray crystallography and MicroED.
SAXS Data Bank
Repository for biological SAXS data and models.